gbm: GBM data
In iClusterPlus: Integrative clustering of multi-type genomic data
Description
Usage
Format
Value
References
Description
This is a subset of the glioblastoma dataset from the cancer genome atlas (TCGA) GBM study (2009) used in Shen et al. (2012).
Usage
1
data(gbm)
Format
A list object containing three data matrices: copy number, methylation and mRNA expression in 84 samples.
Value
gbm.seg
GBM copy number segmentation results genereated by DNAcopy package.
gbm.exp
GBM gene expression data.
gbm.mut
GBM mutation data.
References
Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236
iClusterPlus documentation built on Nov. 8, 2020, 8:01 p.m.
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Description Usage Format Value References
Description
This is a subset of the glioblastoma dataset from the cancer genome atlas (TCGA) GBM study (2009) used in Shen et al. (2012).
Usage
1 | data(gbm)
|
Format
A list object containing three data matrices: copy number, methylation and mRNA expression in 84 samples.
Value
gbm.seg |
GBM copy number segmentation results genereated by DNAcopy package. |
gbm.exp |
GBM gene expression data. |
gbm.mut |
GBM mutation data. |
References
Ronglai Shen, Qianxing Mo, Nikolaus Schultz, Venkatraman E. Seshan, Adam B. Olshen, Jason Huse, Marc Ladanyi, Chris Sander. (2012). Integrative Subtype Discovery in Glioblastoma Using iCluster. PLoS ONE 7, e35236
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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