compute.pod: A function to compute the proportion of deviation from...
In iClusterPlus: Integrative clustering of multi-type genomic data

Description Usage Arguments Value Author(s) References See Also Examples

A function to compute the proportion of deviation from perfect block diagonal matrix.

1	compute.pod(fit)

fit

A iCluster object

pod

proportion of deviation from perfect block diagonal matrix

Ronglai Shen shenr@mskcc.org

Ronglai Shen, Adam Olshen, Marc Ladanyi. (2009). Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis. Bioinformatics 25, 2906-2912.

iCluster,iCluster2, plotiCluster

# library(iCluster)
# data(breast.chr17)
# fit=iCluster(breast.chr17, k=4, lambda=c(0.2,0.2))
# plotiCluster(fit=fit, label=rownames(breast.chr17[[2]]))
# compute.pod(fit)

iClusterPlus documentation built on Nov. 8, 2020, 8:01 p.m.