chiapet: Example Genomic Interaction Data Set
In idr2d: Irreproducible Discovery Rate for Genomic Interactions Data
Description
This object contains genomic interactions on chromosomes 1 to 5, which could
be the results of Hi-C or ChIA-PET experiments, done in duplicates.
Usage
1
Format
A list with two components, the data frames rep1_df and
rep2_df, which have the following seven columns:
column 1: chr_a character; genomic location of anchor A -
chromosome (e.g., "chr3")
column 2: start_a integer; genomic location of anchor A -
start coordinate
column 3: end_a integer; genomic location of anchor A -
end coordinate
column 4: chr_b character; genomic location of anchor B -
chromosome (e.g., "chr3")
column 5: start_b integer; genomic location of anchor B -
start coordinate
column 6: end_b integer; genomic location of anchor B -
end coordinate
column 7: fdr numeric; False Discovery Rate -
significance of interaction
idr2d documentation built on Nov. 8, 2020, 6:16 p.m.
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Description
This object contains genomic interactions on chromosomes 1 to 5, which could be the results of Hi-C or ChIA-PET experiments, done in duplicates.
Usage
1 |
Format
A list with two components, the data frames rep1_df and
rep2_df, which have the following seven columns:
| column 1: | chr_a | character; genomic location of anchor A -
chromosome (e.g., "chr3") |
| column 2: | start_a | integer; genomic location of anchor A - start coordinate |
| column 3: | end_a | integer; genomic location of anchor A - end coordinate |
| column 4: | chr_b | character; genomic location of anchor B -
chromosome (e.g., "chr3") |
| column 5: | start_b | integer; genomic location of anchor B - start coordinate |
| column 6: | end_b | integer; genomic location of anchor B - end coordinate |
| column 7: | fdr | numeric; False Discovery Rate - significance of interaction |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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