hic: Example Hi-C data set
In idr2d: Irreproducible Discovery Rate for Genomic Interactions Data
Description
This object contains data from a Hi-C contact map of human chromosome 1 and
a resolution of 2.5 * 10^6, extracted from GEO series GSE71831.
Usage
1
Format
A list with two components, the data frames rep1_df and
rep2_df, which have the following four columns:
column 1: chr character; genomic location of block -
chromosome (e.g., "chr3")
column 2: region1 integer; genomic location of block -
coordinate A
column 3: region2 integer; genomic location of block -
coordinate B
column 4: value numeric; heuristic used
to rank blocks, in this case: number of reads
idr2d documentation built on Nov. 8, 2020, 6:16 p.m.
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Description
This object contains data from a Hi-C contact map of human chromosome 1 and a resolution of 2.5 * 10^6, extracted from GEO series GSE71831.
Usage
1 |
Format
A list with two components, the data frames rep1_df and
rep2_df, which have the following four columns:
| column 1: | chr | character; genomic location of block -
chromosome (e.g., "chr3") |
| column 2: | region1 | integer; genomic location of block - coordinate A |
| column 3: | region2 | integer; genomic location of block - coordinate B |
| column 4: | value | numeric; heuristic used to rank blocks, in this case: number of reads |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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