remove_nonstandard_chromosomes1d: Removes Peaks on Non-standard Chromosomes

Description Usage Arguments Value Examples

View source: R/auxiliary.R

Description

Removes Peaks on Non-standard Chromosomes

Usage

1

Arguments

x

data frame of genomic peaks, with the following columns (position of columns matter, column names are irrelevant):

column 1: chr character; genomic location of peak - chromosome (e.g., "chr3")
column 2: start integer; genomic location of peak - start coordinate
column 3: end integer; genomic location of peak - end coordinate
column 4: value numeric; p-value, FDR, or heuristic used to rank the peaks

Value

x without non-standard chromosomes.

Examples

1
rep1_df <- remove_nonstandard_chromosomes1d(idr2d:::chipseq$rep1_df)

idr2d documentation built on Nov. 8, 2020, 6:16 p.m.