remove_nonstandard_chromosomes1d: Removes Peaks on Non-standard Chromosomes
In idr2d: Irreproducible Discovery Rate for Genomic Interactions Data
Description
Usage
Arguments
Value
Examples
Description
Removes Peaks on Non-standard Chromosomes
Usage
1
Arguments
x
data frame of genomic peaks, with the following columns
(position of columns matter, column names are irrelevant):
column 1: chr character; genomic location of peak -
chromosome (e.g., "chr3")
column 2: start integer; genomic location of peak -
start coordinate
column 3: end integer; genomic location of peak -
end coordinate
column 4: value numeric; p-value, FDR, or heuristic used
to rank the peaks
Value
x without non-standard chromosomes.
Examples
1
rep1_df <- remove_nonstandard_chromosomes1d(idr2d:::chipseq$rep1_df)
idr2d documentation built on Nov. 8, 2020, 6:16 p.m.
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Description Usage Arguments Value Examples
Description
Removes Peaks on Non-standard Chromosomes
Usage
1 |
Arguments
x |
data frame of genomic peaks, with the following columns (position of columns matter, column names are irrelevant):
|
Value
x without non-standard chromosomes.
Examples
1 | rep1_df <- remove_nonstandard_chromosomes1d(idr2d:::chipseq$rep1_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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