remove_nonstandard_chromosomes2d: Removes Interactions on Non-standard Chromosomes

In idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

Description

Removes Interactions on Non-standard Chromosomes

Usage

remove_nonstandard_chromosomes2d(x)

Arguments

x

data frame of genomic interactions, with the following columns (position of columns matter, column names are irrelevant): column 1: chr_a character; genomic location of anchor A - chromosome (e.g., "chr3") column 2: start_a integer; genomic location of anchor A - start coordinate column 3: end_a integer; genomic location of anchor A - end coordinate column 4: chr_b character; genomic location of anchor B - chromosome (e.g., "chr3") column 5: start_b integer; genomic location of anchor B - start coordinate column 6: end_b integer; genomic location of anchor B - end coordinate column 7: value numeric; p-value, FDR, or heuristic used to rank the interactions

Value

x without non-standard chromosomes.

Examples

rep1_df <- remove_nonstandard_chromosomes2d(idr2d:::chiapet$rep1_df)

idr2d documentation built on Nov. 8, 2020, 6:16 p.m.