idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

Package details

AuthorKonstantin Krismer [aut, cre, cph] (<https://orcid.org/0000-0001-8994-3416>), David Gifford [ths, cph] (<https://orcid.org/0000-0003-1709-4034>)
Bioconductor views Classification DNA3DStructure Epigenetics FunctionalGenomics GeneRegulation HiC PeakDetection
MaintainerKonstantin Krismer <[email protected]>
LicenseMIT + file LICENSE
Version1.0.3
URL https://idr2d.mit.edu
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("idr2d")

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idr2d documentation built on Jan. 19, 2020, 2 a.m.