idr2d: Irreproducible Discovery Rate for Genomic Interactions Data

A tool to measure reproducibility between genomic experiments that produce two-dimensional peaks (interactions between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an extension of the original idr package, which is intended for (one-dimensional) ChIP-seq peaks.

Package details

AuthorKonstantin Krismer [aut, cre, cph] (<>), David Gifford [ths, cph] (<>)
Bioconductor views Classification DNA3DStructure Epigenetics FunctionalGenomics GeneRegulation HiC PeakDetection
MaintainerKonstantin Krismer <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the idr2d package in your browser

Any scripts or data that you put into this service are public.

idr2d documentation built on Nov. 8, 2020, 6:16 p.m.