immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Package index
Search the immunoClust package
Vignettes
Functions
312
Source code
17
Man pages
32
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immunoClust: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
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API

API for immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Global functions
.annotate.addClusters Source code
.annotate.addPop Source code
.annotate.buildModel Source code
.annotate.clearClusters Source code
.annotate.clustering Source code
.annotate.getPop Source code
.annotate.getProp Source code
.annotate.mergedClusters Source code
.annotate.moveClusters Source code
.annotate.newPop Source code
.annotate.plotPop Source code
.annotate.removeClusters Source code
.annotate.restructure Source code
.annotate.retrieveClassified Source code
.annotate.retrieveClusters Source code
.annotate.retrieveUnclassified Source code
.annotate.setParent Source code
.annotate.setPop Source code
.annotate.setProp Source code
.cell.compensate Source code
.cls_colors Source code
.clust.hpairs2 Source code
.clust.mergedClusters Source code
.clust.panel.splom Source code
.clust.panel.xyplot Source code
.clust.partconv Source code
.clusterData Source code
.clusterInclude Source code
.ellipse.panel.splom Source code
.ellipse.panel.xyplot Source code
.ellipsePoints Source code
.exprs Source code
.icl_delta Source code
.icl_delta2 Source code
.icl_lambda Source code
.immunoClust2 Source code
.mergeModel Source code
.meta.clsGate Source code
.meta.freqGate Source code
.meta.numEvents Source code
.meta.numGate Source code
.meta.parGate Source code
.meta.relParent Source code
.pop.restructure Source code
addLevel<- Man page
addLevel<-.immunoMeta Man page
bhattacharyya.coeff Man page Source code
bhattacharyya.dist Man page
bhattacharyya.prob Man page Source code
cell.Classify Man page Source code
cell.ClustData Man page Source code
cell.EM Man page Source code
cell.Estimation Man page Source code
cell.FitModel Man page Source code
cell.InitialModel Man page Source code
cell.ME Man page Source code
cell.MajorIterationLoop Man page Source code
cell.MajorIterationTrans Man page Source code
cell.SubClustering Man page Source code
cell.TestSubCluster Man page Source code
cell.classifyAll Man page Source code
cell.hclust Man page Source code
cell.process Man page Source code
classified Man page Source code
classified,immunoMeta-method Man page
classified.immunoMeta Man page
clusters Man page Source code
clusters,immunoMeta-method Man page
clusters.immunoMeta Man page
dat.exp Man page
dat.fcs Man page
dat.meta Man page
datSplom Man page Source code
desc Man page Source code
desc,immunoMeta-method Man page
desc.immunoMeta Man page
desc<- Man page
desc<-,immunoMeta-method Man page
desc<-.immunoMeta Man page
descFull Man page Source code
descFull,immunoMeta-method Man page
descFull.immunoMeta Man page
events Man page Source code
events,immunoClust-method Man page
events,immunoMeta-method Man page
events.immunoClust Man page
events.immunoMeta Man page
finalize Man page Source code
finalize,immunoMeta-method Man page
finalize.immunoMeta Man page
findLevel Man page Source code
findLevel,immunoMeta-method Man page
findLevel.immunoMeta Man page
immunoClust Man page
immunoClust-class Man page
immunoClust-package Man page
immunoClust.object Man page
immunoClust.package Man page
immunoMeta Man page Source code
immunoMeta-class Man page
immunoMeta-object Man page
immunoMeta.class Man page
immunoMeta.object Man page
label Man page Source code
label,immunoClust-method Man page
label,immunoMeta-method Man page
label.immunoClust Man page
label.immunoMeta Man page
level Man page Source code
level,immunoMeta-method Man page
level.immunoMeta Man page
level<- Man page
level<-.immunoMeta Man page
meta.Clustering Man page Source code
meta.ME Man page Source code
meta.Normalize Man page Source code
meta.RegNorm Man page Source code
meta.SubClustering Man page Source code
meta.TestSubCluster Man page Source code
meta.export Man page
meta.exprs Man page Source code
meta.freqTable Man page Source code
meta.hclust Man page Source code
meta.majorEvents Man page
meta.numClusters Man page Source code
meta.numEvents Man page Source code
meta.parMFI Man page Source code
meta.process Man page Source code
meta.relEvents Man page Source code
meta.relEvents2 Man page
meta.relEvents3 Man page
meta.relParent Man page Source code
move<- Man page
move<-.immunoMeta Man page
mu Man page Source code
mu,immunoClust-method Man page
mu,immunoMeta-method Man page
mu.immunoClust Man page
mu.immunoMeta Man page
ncls Man page Source code
ncls,immunoClust-method Man page
ncls,immunoMeta-method Man page
ncls.immunoClust Man page
ncls.immunoMeta Man page
nobs Man page
nobs,immunoClust-method Man page
nobs,immunoMeta-method Man page
nobs.immunoClust Man page
nobs.immunoMeta Man page
npar Man page Source code
npar,immunoClust-method Man page
npar,immunoMeta-method Man page
npar.immunoClust Man page
npar.immunoMeta Man page
nsam Man page Source code
nsam,immunoMeta-method Man page
nsam.immunoMeta Man page
parameters Man page
parameters,immunoClust-method Man page
parameters,immunoMeta-method Man page
parameters.immunoClust Man page
parameters.immunoMeta Man page
parameters<- Man page
parameters<-,immunoClust,character-method Man page
parameters<-,immunoMeta,character-method Man page
parameters<-.immunoClust Man page
parameters<-.immunoMeta Man page
parent<- Man page
parent<-.immunoMeta Man page
parent<-.immunoMeta-method Man page
plot,immunoClust,missing-method Man page
plot,immunoClust-method Man page
plot,immunoMeta,missing-method Man page
plot,immunoMeta-method Man page
plot.immunoClust Man page Man page
plot.immunoMeta Man page Source code
posterior Man page Source code
posterior,immunoClust-method Man page
posterior,immunoMeta-method Man page
posterior.immunoClust Man page
posterior.immunoMeta Man page
prop Man page Source code
prop,immunoMeta-method Man page
prop.immunoMeta Man page
prop<- Man page
prop<-,immunoMeta-method Man page
prop<-.immunoMeta Man page
remove<- Man page
remove<-.immunoMeta Man page
removed.above Man page Source code
removed.below Man page Source code
sam_clsEvents Man page Source code
sam_clsEvents,immunoMeta-method Man page
sam_clsEvents.immunoMeta Man page
sam_clsMu Man page Source code
sam_clsMu,immunoMeta-method Man page
sam_clsMu.immunoMeta Man page
sam_clsSigma Man page Source code
sam_clsSigma,immunoMeta-method Man page
sam_clsSigma.immunoMeta Man page
sam_clsWeights Man page Source code
sam_clsWeights,immunoMeta-method Man page
sam_clsWeights.immunoMeta Man page
sam_ncls Man page Source code
sam_ncls,immunoMeta-method Man page
sam_ncls.immunoMeta Man page
show Man page
show,immunoClust-method Man page
show,immunoMeta-method Man page
show.immunoClust Man page
show.immunoMeta Man page Source code
sigma Man page
sigma,immunoClust-method Man page
sigma,immunoMeta-method Man page
sigma.immunoClust Man page
sigma.immunoMeta Man page
splom Man page
splom,immunoClust,flowFrame-method Man page
splom,immunoClust,matrix-method Man page
splom,immunoClust,missing-method Man page
splom.immunoClust Man page
subset Man page
subset,immunoClust-method Man page
subset,immunoMeta-method Man page
subset.immunoClust Man page
subset.immunoMeta Man page
summary Man page
summary,immunoClust-method Man page
summary,immunoMeta-method Man page
summary.immunoClust Man page
summary.immunoMeta Man page Source code
trans.ApplyToData Man page Source code
trans.FitToData Man page Source code
transfer<- Man page
transfer<-,immunoMeta,immunoMeta-method Man page
transfer<-.immunoMeta Man page
transformParams Man page Source code
transformParams,immunoClust-method Man page
transformParams,immunoMeta-method Man page
transformParams.immunoClust Man page
transformParams.immunoMeta Man page
unclassified Man page Source code
unclassified,immunoMeta-method Man page
unclassified.immunoMeta Man page
weights Man page
weights,immunoClust-method Man page
weights,immunoMeta-method Man page
weights.immunoClust Man page
weights.immunoMeta Man page
immunoClust documentation built on Nov. 8, 2020, 5:19 p.m.

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