isomiRs: Analyze isomiRs and miRNAs from small RNA-seq

Characterization of miRNAs and isomiRs, clustering and differential expression.

AuthorLorena Pantano, Georgia Escaramis
Date of publicationNone
MaintainerLorena Pantano <lorena.pantano@gmail.com>
LicenseMIT + file LICENSE
Version1.2.0

View on Bioconductor

Functions

counts Man page
counts.IsomirDataSeq Man page
counts<-,IsomirDataSeq,matrix-method Man page
counts,IsomirDataSeq-method Man page
find_targets Man page
isoCounts Man page
isoDE Man page
IsomirDataSeq Man page
IsomirDataSeq-class Man page
IsomirDataSeqFromFiles Man page
isoNetwork Man page
isoNorm Man page
isoPlot Man page
isoPlotNet Man page
isoPlotPosition Man page
isoPLSDA Man page
isoPLSDAplot Man page
isoSelect Man page
isoSelect.IsomirDataSeq Man page
isoSelect,IsomirDataSeq-method Man page
isoTop Man page
mirData Man page

Files

isomiRs/.travis.yml
isomiRs/DESCRIPTION
isomiRs/LICENSE
isomiRs/NAMESPACE
isomiRs/NEWS
isomiRs/R
isomiRs/R/AllClasses.R isomiRs/R/AllGenerics.R isomiRs/R/AllMethods.R isomiRs/R/PLSDA.R isomiRs/R/internal.R isomiRs/R/isomiRs.R isomiRs/R/mirData-data.R isomiRs/R/targets.R
isomiRs/README.md
isomiRs/TODO.md
isomiRs/build
isomiRs/build/vignette.rds
isomiRs/data
isomiRs/data/datalist
isomiRs/data/isoExample.rda
isomiRs/data/mirData.rda
isomiRs/inst
isomiRs/inst/doc
isomiRs/inst/doc/isomiRs-intro.R
isomiRs/inst/doc/isomiRs-intro.Rnw
isomiRs/inst/doc/isomiRs-intro.pdf
isomiRs/inst/extra
isomiRs/inst/extra/sample1.mirna
isomiRs/inst/extra/sample2.mirna
isomiRs/inst/unitTests
isomiRs/inst/unitTests/test_singleFunctions.R
isomiRs/man
isomiRs/man/IsomirDataSeq.Rd isomiRs/man/IsomirDataSeqFromFiles.Rd isomiRs/man/counts.Rd isomiRs/man/find_targets.Rd isomiRs/man/isoCounts.Rd isomiRs/man/isoDE.Rd isomiRs/man/isoNetwork.Rd isomiRs/man/isoNorm.Rd isomiRs/man/isoPLSDA.Rd isomiRs/man/isoPLSDAplot.Rd isomiRs/man/isoPlot.Rd isomiRs/man/isoPlotNet.Rd isomiRs/man/isoPlotPosition.Rd isomiRs/man/isoSelect.Rd isomiRs/man/isoTop.Rd isomiRs/man/mirData.Rd
isomiRs/tests
isomiRs/tests/runTests.R
isomiRs/vignettes
isomiRs/vignettes/isomiRs-intro.Rnw
isomiRs/vignettes/isomirs.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.