isoNorm: Normalize count matrix

Description Usage Arguments Value Examples

View source: R/isomiRs.R

Description

This function normalizes raw count matrix using DESeq2::rlog() function from DESeq2::DESeq2-package.

Usage

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Arguments

ids

Object of class IsomirDataSeq.

formula

Formula that will be used for normalization.

Value

IsomirDataSeq object with the normalized count matrix in a slot. The normalized matrix can be access with counts(ids, norm=TRUE).

Examples

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data(mirData)
ids <- isoCounts(mirData, minc=10, mins=6)
ids <- isoNorm(mirData, formula=~group)
head(counts(ids, norm=TRUE))

isomiRs documentation built on Nov. 17, 2017, 12:44 p.m.