mirna2targetscan: Find targets in targetscan database

In isomiRs: Analyze isomiRs and miRNAs from small RNA-seq

Description

From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.

Usage

mirna2targetscan(mirna, species = "hsa", org = NULL, keytype = NULL)

Arguments

mirna	Character vector with miRNA names as in miRBase 21.
species	hsa or mmu supported right now.
org	AnnotationDb obejct. For example:(org.Mm.eg.db)
keytype	Character mentioning the gene id to use. For example, ENSEMBL.

Value

data.frame with 4 columns:

• miRFamily

• Seedmatch

• PCT

• entrezGene

Examples

library(targetscan.Hs.eg.db)
mirna2targetscan(c("hsa-miR-34c-5p"))

isomiRs documentation built on Jan. 31, 2021, 2 a.m.