counts: Accessors for the count matrix of a IsomirDataSeq object.

Description Usage Arguments Value Author(s) Examples

Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each isomiR, and one column for each sample. The normalized matrix can be obtained by using the parameter norm=TRUE.

Usage

1
2
3
4
5
6
7
counts.IsomirDataSeq(object, norm = FALSE)

## S4 method for signature 'IsomirDataSeq'
counts(object, norm = FALSE)

## S4 replacement method for signature 'IsomirDataSeq,matrix'
counts(object) <- value

Arguments

object

A IsomirDataSeq object.

norm

Boolean, return log2-normalized counts.

value

An integer matrix.

Value

base::matrix with raw or normalized count data.

Author(s)

Lorena Pantano

Examples

1
2

isomiRs documentation built on Nov. 17, 2017, 12:44 p.m.