counts: Accessors for the count matrix of a IsomirDataSeq object.

Description

The counts slot holds the count data as a matrix of non-negative integer count values, one row for each isomiR, and one column for each sample. The normalized matrix can be obtained by using the parameter norm=TRUE.

Usage

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counts.IsomirDataSeq(object, norm = FALSE)

## S4 method for signature 'IsomirDataSeq'
counts(object, norm = FALSE)

## S4 replacement method for signature 'IsomirDataSeq,matrix'
counts(object) <- value

Arguments

object

a IsomirDataSeq object

norm

TRUE return log2-normalized counts

value

an integer matrix

Value

matrix with raw or normalized count data.

Author(s)

Lorena Pantano

Examples

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Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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