Differential expression analysis with DESeq2
This function does differential expression analysis with
DESeq2-package using the specific formula.
It will return a
object of class
used for DE analysis
options to pass to isoCounts including ref, iso5, iso3, add, subs and seed parameters.
First, this function collapses all isomiRs in different types.
Read more at
isoCounts to know the different options
available to collapse isomiRs.
DESeq2-package is used to do differential
expression analysis. It uses the count matrix and design experiment
stored at (
to construct a
To get the differential expression isomiRs, use results from
DESeq2 package. This allows to ask for different contrast
without calling again
manual to know how to access all the information.
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