This function does differential expression analysis with DESeq2::DESeq2-package using the specific formula. It will return a DESeq2::DESeqDataSet object.
Object of class IsomirDataSeq.
Formula used for DE analysis.
Options to pass to
First, this function collapses all isomiRs in different types.
Read more at
isoCounts() to know the different options
available to collapse isomiRs.
After that, DESeq2::DESeq2-package is used to do differential
expression analysis. It uses the count matrix and design experiment
stored at (
to construct a DESeq2::DESeqDataSet object.
To get the differential expression isomiRs, use
DESeq2 package. This allows to ask for different contrast
without calling again
manual to know how to access all the information.
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