Man pages for kebabs
Kernel-Based Analysis Of Biological Sequences

annotationSpecificKernel	Annotation Specific Kernel
BioVector	DNAVector, RNAVector, AAVector Objects and BioVector Class
BioVector-class	BioVector, DNAVector, RNAVector and AAVector Classes
computeROCandAUC	Compute Receiver Operating Characteristic And Area Under The...
ControlInformation-class	KeBABS Control Information Class
CrossValidationResultAccessors	CrossValidationResult Accessors
CrossValidationResult-class	Cross Validation Result Class
evaluatePrediction	Evaluate Prediction
explicitRepresentation	Explict Representation
ExplicitRepresentationAccessors	ExplicitRepresentation Accessors
ExplicitRepresentation-class	Explicit Representation Dense and Sparse Classes
featureWeights	Feature Weights
gappyPairKernel	Gappy Pair Kernel
GappyPairKernel-class	Gappy Pair Kernel Class
genRandBioSeqs	Generate Random Biological Sequences
getPredictionProfile-methods	Calculation Of Predicition Profiles
getPredProfMixture-methods	Calculation Of Predicition Profiles for Mixture Kernels
heatmap-methods	Heatmap Methods
KBModelAccessors	KBModel Accessors
KBModel-class	KeBABS Model Class
kbsvm-methods	KeBABS Training Methods
kebabsCollectInfo	Collect KeBABS Package Information
kebabsData	KeBABS Sequence Data
kebabsOverview	kebabs
KernelMatrixAccessors	KernelMatrix Accessors
KernelMatrix-class	Kernel Matrix Class
LinearKernel	Linear Kernel
mismatchKernel	Mismatch Kernel
MismatchKernel-class	Mismatch Kernel Class
ModelSelectionResultAccessors	ModelSelectionResult Accessors
ModelSelectionResult-class	Model Selection Result Class
motifKernel	Motif Kernel
MotifKernel-class	Motif Kernel Class
performCrossValidation-methods	KeBABS Cross Validation
performGridSearch	KeBABS Grid Search
performModelSelection	KeBABS Model Selection
plot-methods	Plot Prediction Profiles, Cross Validation Result, Grid...
positionDependentKernel	Position Dependent Kernel
PredictionProfileAccessors	PredictionProfile Accessors
PredictionProfile-class	Prediction Profile Class
predict-methods	KeBABS Prediction Methods
ROCDataAccessors	ROCData Accessors
ROCData-class	ROC Data Class
sequenceKernel	Sequence Kernel
SequenceKernel-class	Sequence Kernel Class
show-methods	Display Various KeBABS Objects
spectrumKernel	Spectrum Kernel
SpectrumKernel-class	Spectrum Kernel Class
SVMAccess	SVM Access for Training and Prediction
SVMInformation-class	SVM Information Class
symmetricPairKernel	Symmetric Pair Kernel
SymmetricPairKernel-class	Symmetric Pair Kernel Class