maanova: Tools for analyzing Micro Array experiments

Analysis of N-dye Micro Array experiment using mixed model effect. Containing analysis of variance, permutation and bootstrap, cluster and consensus tree.

AuthorHao Wu, modified by Hyuna Yang and Keith Sheppard with ideas from Gary Churchill, Katie Kerr and Xiangqin Cui.
Date of publicationNone
MaintainerKeith Sheppard <keith.sheppard@jax.org>
LicenseGPL (>= 2)
Version1.44.0
http://research.jax.org/faculty/churchill

View on Bioconductor

Files in this package

maanova/DESCRIPTION
maanova/NAMESPACE
maanova/R
maanova/R/Rmaanova.version.R maanova/R/adjPval.R maanova/R/arrayview.R maanova/R/consensus.R maanova/R/dyeswapfileter.R maanova/R/fill.missing.R maanova/R/fitmaanova.R maanova/R/fom.R maanova/R/geneprofile.R maanova/R/gridcheck.R maanova/R/macluster.R maanova/R/makeModel.R maanova/R/matest.R maanova/R/matestutil.R maanova/R/mixed.R maanova/R/read.madata.R maanova/R/resiplot.R maanova/R/riplot.R maanova/R/subset.madata.R maanova/R/summarytable.R maanova/R/transform.madata.R maanova/R/util.R maanova/R/varplot.R maanova/R/volcano.R maanova/R/write.madata.R
maanova/build
maanova/build/vignette.rds
maanova/data
maanova/data/abf1.RData
maanova/data/kidney.RData
maanova/demo
maanova/demo/00Index
maanova/demo/abf1.R
maanova/demo/kidney.R
maanova/inst
maanova/inst/LICENSE.txt
maanova/inst/README.txt
maanova/inst/STATUS.txt
maanova/inst/TODO.txt
maanova/inst/doc
maanova/inst/doc/maanova.Rnw
maanova/inst/doc/maanova.pdf
maanova/man
maanova/man/PairContrast.Rd maanova/man/Rmaanova.version.Rd maanova/man/abf1.Rd maanova/man/adjPval.Rd maanova/man/arrayview.Rd maanova/man/consensus.Rd maanova/man/dyeswapfilter.Rd maanova/man/fill.missing.Rd maanova/man/fitmaanova.Rd maanova/man/fom.Rd maanova/man/geneprofile.Rd maanova/man/gridcheck.Rd maanova/man/kidney.Rd maanova/man/maanova-internal.Rd maanova/man/macluster.Rd maanova/man/matest.Rd maanova/man/read.madata.Rd maanova/man/resiplot.Rd maanova/man/riplot.Rd maanova/man/subset.madata.Rd maanova/man/summarytable.Rd maanova/man/transform.madata.Rd maanova/man/varplot.Rd maanova/man/volcano.Rd maanova/man/write.madata.Rd
maanova/src
maanova/src/Makevars
maanova/src/Makevars.win
maanova/src/makeratio.c
maanova/src/masvd.c
maanova/src/masvd.h
maanova/src/shift.c
maanova/src/util.c
maanova/src/util.h
maanova/vignettes
maanova/vignettes/MPI.tex
maanova/vignettes/Rtour.tex
maanova/vignettes/abf1.tex
maanova/vignettes/abf1fig.pdf
maanova/vignettes/algorithm.tex
maanova/vignettes/arrayview.png
maanova/vignettes/camda.tex
maanova/vignettes/faq.tex
maanova/vignettes/gridcheck.png
maanova/vignettes/hckidney.pdf
maanova/vignettes/intro.tex
maanova/vignettes/maanova.Rnw
maanova/vignettes/maanova.bib
maanova/vignettes/paigen.tex
maanova/vignettes/prepfile.tex
maanova/vignettes/riplot.png
maanova/vignettes/rlowess.png
maanova/vignettes/vgprofile.pdf
maanova/vignettes/volcano.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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