Files in motifStack

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

README.md R/motifCircos.R R/motifStack.R R/signature.R R/motifCloud.R R/motifStack-Package.R R/DNAmotifToRNAmotif.R R/globals.R R/pfm.R R/pssm.R R/motifHclust.R R/matalign.R R/publicUtilities.R R/AAmotifAlignment.R R/plotMotifOverMotif.R R/DNAmotifAlignment.R R/plotMotifStackWithPhylog.R R/motifPiles.R R/plotAffinityLogo.R R/importMatrix.R R/reorderUPGMAtree.R R/psam.R R/alignmentByPCC.R R/clusterMotifs.R R/browseMotifs.R R/motifSignature.R R/plotMotifLogo.R R/plotMotifLogoStack.R R/privateUtilities.R R/plotMotifLogoStackWithTree.R R/marker.R R/plotMotifStackWithRadialPhylog.R R/pcm.R R/mergeMotifs.R R/getRankedUniqueMotifs.R vignettes/motifStack_HTML.Rmd man/motifGrob.Rd man/traceBackLocal.Rd man/compare2profiles.Rd man/getRankedUniqueMotifs.Rd man/plotMotifOverMotif.Rd man/getScore.Rd man/motifStack.Rd man/importMatrix.Rd man/GeomMotif.Rd man/motifCloud.Rd man/plotYaxis.Rd man/motifHclust.Rd man/reorderUPGMAtree.Rd man/DNAmotifToRNAmotif.Rd man/readPCM.Rd man/highlightCol.Rd man/motifSig-class.Rd man/plotAffinityLogo.Rd man/calF.Rd man/clusterMotifs.Rd man/psam-class.Rd man/pcm-class.Rd man/pfm2pwm.Rd man/dpGlobal.Rd man/pfm-class.Rd man/traceBackGlobal.Rd man/geom_motif.Rd man/plotMotifLogoStackWithTree.Rd man/DNAmotifAlignment.Rd man/plotXaxis.Rd man/plotMotifLogoA.Rd man/ouNode-class.Rd man/browseMotifs-shiny.Rd man/motifSignature.Rd man/colorset.Rd man/browseMotifs.Rd man/mergeMotifs.Rd man/compareProfiles.Rd man/getALLRscoreFromCounts.Rd man/motifStack-package.Rd man/dpLocal.Rd man/pssm-class.Rd man/getDistance.Rd man/AAmotifAlignment.Rd man/plotMotifStackWithPhylog.Rd man/marker-class.Rd man/calI.Rd man/plotMotifLogo.Rd man/matalign.Rd man/motifPiles.Rd man/plotMotifStackWithRadialPhylog.Rd man/plotMotifLogoStack.Rd man/motifCircos.Rd tests/runTests.R inst/doc/motifStack_HTML.Rmd inst/doc/motifStack_HTML.R inst/unitTests/test_motifStack.R