motifSig-class: Class '"motifSig"'

In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Description

An object of class "motifSig" represents the output of function motifSignature

methods for motifSig objects.

Usage

signatures(object)

frequence(object)

nodelist(object)

sigColor(object)

## S4 method for signature 'motifSig'
x$name

Arguments

object	An object of class motifSig.
x	A motifSig object
name	slot name of motifSig object

Objects from the Class

Objects can be created by calls of the form new("motifSig", signature, freq, nodelist, gpcol).

Methods

signatures

signature(object = "motifSig") return the signatures of motifSig

frequence

signature(object = "motifSig") return the frequency of motifSig

nodelist

signature(object = "motifSig") return the nodelist of motifSig

sigColor

signature(object = "motifSig") return the group color sets of motifSig

$, $<-

Get or set the slot of motifSig

motifStack documentation built on Nov. 8, 2020, 7:43 p.m.