compareProfiles: comapre w pcm
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Description
compare two pcm objects
Usage
1
2
3
4
5
6
7
compareProfiles(
pcm1,
pcm2,
method = c("Smith-Waterman", "Needleman-Wunsch"),
pseudo = 1,
revcomp = TRUE
)
Arguments
pcm1, pcm2
object of pcm
method
Alignment method. "Smith-Waterman" or "Needleman-Wunsch".
Default is "Smith-Waterma"
pseudo
pseudocount
revcomp
Check reverseComplement or not.
Value
a list with names: motif1, motif2, alignmentScore,
startPos1, startPos2, endPos1, endPos2, alignmentLength.
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
compare two pcm objects
Usage
1 2 3 4 5 6 7 | compareProfiles(
pcm1,
pcm2,
method = c("Smith-Waterman", "Needleman-Wunsch"),
pseudo = 1,
revcomp = TRUE
)
|
Arguments
pcm1, pcm2 |
object of pcm |
method |
Alignment method. "Smith-Waterman" or "Needleman-Wunsch". Default is "Smith-Waterma" |
pseudo |
pseudocount |
revcomp |
Check reverseComplement or not. |
Value
a list with names: motif1, motif2, alignmentScore, startPos1, startPos2, endPos1, endPos2, alignmentLength.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.