plotMotifLogoA: plot sequence logo without plot.new

In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Description

plot amino acid or DNA sequence logo in a given canvas

Usage

plotMotifLogoA(
  pfm,
  font = "Helvetica-Bold",
  fontface = "bold",
  ic.scale = TRUE,
  draw = TRUE
)

Arguments

pfm	an object of pfm
font	font of logo
fontface	fontface of logo
ic.scale	logical If TRUE, the height of each column is proportional to its information content. Otherwise, all columns have the same height.
draw	Vector (logical(1)). TRUE to plot. FALSE, return a gList

Value

none

Examples

pcm<-matrix(runif(40,0,100),nrow=4,ncol=10)
pfm<-pcm2pfm(pcm)
rownames(pfm)<-c("A","C","G","T")
motif <- new("pfm", mat=pfm, name="bin_SOLEXA")
plotMotifLogoA(motif)

motifStack documentation built on Nov. 8, 2020, 7:43 p.m.