Files in motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

NEWS
README.md
DESCRIPTION
NAMESPACE
R/getRankedUniqueMotifs.R R/pcm.R R/plotMotifStackWithRadialPhylog.R R/motifSignature.R R/plotAffinityLogo.R R/DNAmotifAlignment.R R/alignmentByPCC.R R/mergeMotifs.R R/pfm.R R/plotMotifLogoStackWithTree.R R/signature.R R/browseMotifs.R R/privateUtilities.R R/importMatrix.R R/motifStack.R R/plotMotifLogoStack.R R/motifCircos.R R/psam.R R/plotMotifOverMotif.R R/motifCloud.R R/plotMotifLogo.R R/plotMotifStackWithPhylog.R R/publicUtilities.R R/reorderUPGMAtree.R R/motifPiles.R
vignettes/nature.csl
vignettes/ref.bib
vignettes/motifStack_HTML.Rmd man/psam-methods.Rd man/plotAffinityLogo.Rd man/plotXaxis.Rd man/plotMotifStackWithPhylog.Rd man/motifSig-methods.Rd man/browseMotifs.Rd man/motifPiles.Rd man/importMatrix.Rd man/plotMotifLogoA.Rd man/plotMotifOverMotif.Rd man/colorset.Rd man/pfm2pwm.Rd man/psam-class.Rd man/motifSig-class.Rd man/pfm-methods.Rd man/getRankedUniqueMotifs.Rd man/readPCM.Rd man/plotMotifStackWithRadialPhylog.Rd man/plotMotifLogoStack.Rd man/plotMotifLogo.Rd man/ouNode-class.Rd man/browseMotifs-shiny.Rd man/DNAmotifAlignment.Rd man/motifCircos.Rd man/highlightCol.Rd man/pfm-class.Rd man/plotYaxis.Rd man/motifSignature.Rd man/motifCloud.Rd man/motifStack.Rd man/reorderUPGMAtree.Rd man/motifStack-package.Rd man/plotMotifLogoStackWithTree.Rd man/pcm-class.Rd man/mergeMotifs.Rd man/pcm-methods.Rd
inst/htmlwidgets/browseMotifs.yaml
inst/htmlwidgets/browseMotifs.js
inst/htmlwidgets/lib/plotWebLogo/d3-plotWebLogo.css
inst/htmlwidgets/lib/plotWebLogo/d3-plotWebLogo.js
inst/htmlwidgets/lib/saveSvgAsPng/saveSvgAsPng.js
inst/htmlwidgets/lib/d3/d3.v4.min.js
inst/htmlwidgets/lib/d3-tip/d3-tip.css
inst/htmlwidgets/lib/d3-tip/d3-tip.js
inst/extdata/test.beeml
inst/extdata/RUNX1.pfm
inst/extdata/FoxP_SOLEXA.pcm
inst/extdata/RUNX1.transfac
inst/extdata/dna.meme
inst/extdata/PWM.cisbp
inst/extdata/cap.txt
inst/extdata/slp2_SOLEXA.pcm
inst/extdata/fkh_NAR.pcm
inst/extdata/MA0002.1.jaspar
inst/extdata/transfac.like.test.transfac
inst/extdata/slp2.pfm
inst/extdata/bin_SOLEXA.pcm
inst/extdata/slp1_SOLEXA.pcm
inst/extdata/fd64A_SOLEXA.pcm
inst/extdata/PSAM.mxr
inst/extdata/foxo_SOLEXA.pcm
inst/unitTests/test_motifStack.R inst/doc/motifStack_HTML.R inst/doc/motifStack_HTML.Rmd
inst/doc/motifStack_HTML.html
build/vignette.rds
tests/runTests.R
motifStack documentation built on Nov. 17, 2017, 9:25 a.m.