clusterMotifs: cluster motifs
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Examples
View source: R/clusterMotifs.R
Description
A help function to do matalign and motifHclust in one function.
Usage
1
clusterMotifs(motifs, ...)
Arguments
motifs
A list of pcms of pfms.
...
parameter to be passed to matalign function.
Value
An object of hclust.
Examples
1
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3
4
5
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if(interactive() || Sys.getenv("USER")=="jianhongou"){
fp <- system.file("extdata", package="motifStack")
fs <- dir(fp, "pcm$")
pcms <- importMatrix(file.path(fp, fs), format="pcm")
hc <- clusterMotifs(pcms)
}
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value Examples
View source: R/clusterMotifs.R
Description
A help function to do matalign and motifHclust in one function.
Usage
1 | clusterMotifs(motifs, ...)
|
Arguments
motifs |
A list of pcms of pfms. |
... |
parameter to be passed to matalign function. |
Value
An object of hclust.
Examples
1 2 3 4 5 6 | if(interactive() || Sys.getenv("USER")=="jianhongou"){
fp <- system.file("extdata", package="motifStack")
fs <- dir(fp, "pcm$")
pcms <- importMatrix(file.path(fp, fs), format="pcm")
hc <- clusterMotifs(pcms)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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