getDistance: Calculate distances between two profiles
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Description
Calculate distances between two profiles
Usage
1
getDistance(hsp, count1, count2, P1, P2, pseudo)
Arguments
hsp
output of traceBack function
count1, count2
motif profile 1 or 2
P1, P2
background of profile 1 or 2
pseudo
pseudocount
Value
full distance and aligned distance.
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value
Description
Calculate distances between two profiles
Usage
1 | getDistance(hsp, count1, count2, P1, P2, pseudo)
|
Arguments
hsp |
output of traceBack function |
count1, count2 |
motif profile 1 or 2 |
P1, P2 |
background of profile 1 or 2 |
pseudo |
pseudocount |
Value
full distance and aligned distance.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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