AAmotifAlignment: align AA motifs
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Examples
View source: R/AAmotifAlignment.R
Description
align AA motifs for plotting motifs stack
Usage
1
AAmotifAlignment(pcms, threshold = 0.4, minimalConsensus = 0)
Arguments
pcms
a list of position frequency matrices, pfms must be a list of
class pcm
threshold
information content cutoff threshold for useful postions
minimalConsensus
minimal length of consensus for alignment
Value
a list of aligned motifs
Examples
1
2
3
pcms<-importMatrix(system.file("extdata", "prot.meme", package="motifStack"),
format="meme", to="pfm")
motifs<-AAmotifAlignment(pcms)
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value Examples
View source: R/AAmotifAlignment.R
Description
align AA motifs for plotting motifs stack
Usage
1 | AAmotifAlignment(pcms, threshold = 0.4, minimalConsensus = 0)
|
Arguments
pcms |
a list of position frequency matrices, pfms must be a list of class pcm |
threshold |
information content cutoff threshold for useful postions |
minimalConsensus |
minimal length of consensus for alignment |
Value
a list of aligned motifs
Examples
1 2 3 | pcms<-importMatrix(system.file("extdata", "prot.meme", package="motifStack"),
format="meme", to="pfm")
motifs<-AAmotifAlignment(pcms)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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