mergeMotifs: merge multiple motifs
In motifStack: Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Description
Usage
Arguments
Value
Author(s)
Examples
Description
merge multiple motifs by calculate mean of each position
Usage
1
mergeMotifs(..., bgNoise = NA)
Arguments
...
pcm or pfm objects
bgNoise
if it is not NA, test will using a background by
Dirichlet(1)-distributed random frequencies with weight bg.noise. The value
of bgNoise should be a number in the range of 0 to 1, eg. 0.05
Value
a pfm object
Author(s)
Jianhong Ou
Examples
1
2
pcms<-readPCM(file.path(find.package("motifStack"), "extdata"),"pcm$")
mergeMotifs(pcms)
motifStack documentation built on Nov. 8, 2020, 7:43 p.m.
R Package Documentation
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Description Usage Arguments Value Author(s) Examples
Description
merge multiple motifs by calculate mean of each position
Usage
1 | mergeMotifs(..., bgNoise = NA)
|
Arguments
... |
pcm or pfm objects |
bgNoise |
if it is not NA, test will using a background by Dirichlet(1)-distributed random frequencies with weight bg.noise. The value of bgNoise should be a number in the range of 0 to 1, eg. 0.05 |
Value
a pfm object
Author(s)
Jianhong Ou
Examples
1 2 | pcms<-readPCM(file.path(find.package("motifStack"), "extdata"),"pcm$")
mergeMotifs(pcms)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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