API for motifcounter
R package for analysing TFBSs in DNA sequences

Global functions
.Background Man page
.Overlap Man page
.onLoad Source code
.onUnload Source code
Background-class Man page
Overlap-class Man page
clumpSizeDist Man page Source code
combinatorialDist Man page Source code
compoundPoissonDist Man page Source code
computeClumpStartProb Man page Source code
generateDNAString Man page Source code
generateDNAStringSet Man page Source code
getAlpha Man page Source code
getBeta Man page Source code
getBeta3p Man page Source code
getBeta5p Man page Source code
getCounts Man page Source code
getGamma Man page Source code
getOrder Man page Source code
getSinglestranded Man page Source code
getStation Man page Source code
getTrans Man page Source code
hitStrand Man page Source code
lenSequences Man page Source code
markovModel Man page Source code
motifAndBackgroundValid Man page Source code
motifEnrichment Man page Source code
motifHitProfile Man page Source code
motifHits Man page Source code
motifValid Man page Source code
motifcounter Man page
motifcounter-package Man page
motifcounterOptions Man page Source code
normalizeMotif Man page Source code
numMotifHits Man page Source code
probOverlapHit Man page Source code
readBackground Man page Source code
revcompMotif Man page Source code
scoreDist Man page Source code
scoreDistBf Man page Source code
scoreDistEmpirical Man page Source code
scoreHistogram Man page Source code
scoreHistogramSingleSeq Man page Source code
scoreProfile Man page Source code
scoreSequence Man page Source code
scoreStrand Man page Source code
scoreThreshold Man page Source code
sigLevel Man page Source code
simulateClumpSizeDist Man page Source code
simulateNumHitsDist Man page Source code
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.