motifValid: Check valididity of PFM
In motifcounter: R package for analysing TFBSs in DNA sequences
Description
Usage
Arguments
Value
Examples
View source: R/forground_wrapper.R
Description
This function checks if the PFM is valid. The function throws
an error if the R matrix does not represent a PFM.
Usage
1
motifValid(pfm)
Arguments
pfm
An R matrix that represents a position frequency matrix
Value
None
Examples
1
2
3
4
5
6
# Load motif
motiffile = system.file("extdata", "x1.tab", package = "motifcounter")
motif = t(as.matrix(read.table(motiffile)))
# Check validity
motifcounter:::motifValid(motif)
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/forground_wrapper.R
Description
This function checks if the PFM is valid. The function throws an error if the R matrix does not represent a PFM.
Usage
1 | motifValid(pfm)
|
Arguments
pfm |
An R matrix that represents a position frequency matrix |
Value
None
Examples
1 2 3 4 5 6 | # Load motif
motiffile = system.file("extdata", "x1.tab", package = "motifcounter")
motif = t(as.matrix(read.table(motiffile)))
# Check validity
motifcounter:::motifValid(motif)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.