generateDNAStringSet: Generate DNAStringSet
In motifcounter: R package for analysing TFBSs in DNA sequences

Description Usage Arguments Value See Also Examples

This function generates a DNAStringSet-object of the given individual sequence lengths by sampling from the background model.

1	generateDNAStringSet(seqlen, bg)

`seqlen`	Integer-valued vector that defines the lengths of the individual sequences. For a given DNAStringSet, this information can be retrieved using `numMotifHits`.
`bg`	A Background object

A DNAStringSet object

generateDNAStringSet

# Load sequences
seqfile = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(seqfile)

# Load background
bg = readBackground(seqs, 1)

# Generate random sequences of various lengths
motifcounter:::generateDNAStringSet(10:50, bg)