lenSequences: Length of sequences in a given fasta file
In motifcounter: R package for analysing TFBSs in DNA sequences
Description
Usage
Arguments
Value
Examples
View source: R/observed_wrapper.R
Description
The function returns a vector containing the lengths
of each sequence contained in a set of sequences. Sequences
containing 'N' or 'n' are skipped from the analysis and are
set to length zero.
Usage
1
lenSequences(seqs)
Arguments
seqs
A DNAStringSet object
Value
A vector containing the lengths of each individual sequences
Examples
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# Load sequences
file = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(file)
# Retrieve sequence lengths
motifcounter:::lenSequences(seqs)
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value Examples
View source: R/observed_wrapper.R
Description
The function returns a vector containing the lengths of each sequence contained in a set of sequences. Sequences containing 'N' or 'n' are skipped from the analysis and are set to length zero.
Usage
1 | lenSequences(seqs)
|
Arguments
seqs |
A DNAStringSet object |
Value
A vector containing the lengths of each individual sequences
Examples
1 2 3 4 5 6 | # Load sequences
file = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(file)
# Retrieve sequence lengths
motifcounter:::lenSequences(seqs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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