revcompMotif: Reverse complements a PFM
In motifcounter: R package for analysing TFBSs in DNA sequences
Description
Usage
Arguments
Value
Examples
View source: R/forground_wrapper.R
Description
This function computes the reverse complement of a given PFM.
Usage
1
revcompMotif(pfm)
Arguments
pfm
An R matrix that represents a position frequency matrix
Value
Reverse complemented PFM
Examples
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# Load motif
motiffile = system.file("extdata", "x1.tab", package = "motifcounter")
motif = t(as.matrix(read.table(motiffile)))
# Reverse complement motif
revcompmotif = motifcounter:::revcompMotif(motif)
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value Examples
View source: R/forground_wrapper.R
Description
This function computes the reverse complement of a given PFM.
Usage
1 | revcompMotif(pfm)
|
Arguments
pfm |
An R matrix that represents a position frequency matrix |
Value
Reverse complemented PFM
Examples
1 2 3 4 5 6 | # Load motif
motiffile = system.file("extdata", "x1.tab", package = "motifcounter")
motif = t(as.matrix(read.table(motiffile)))
# Reverse complement motif
revcompmotif = motifcounter:::revcompMotif(motif)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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