Overlap-class: Overlap class definition
In motifcounter: R package for analysing TFBSs in DNA sequences

Objects of this class serve as a container that holds parameters for the overlapping hit probabilities.

An Overlap object is constructed via the probOverlapHit

alpha: Scalar numeric significance level to call motif matches
beta: Numeric vector of principal overlapping hit probabilities on the same strand.
beta3p: Numeric vector of principal overlapping hit probabilities with 3'-overlap.
beta5p: Numeric vector of principal overlapping hit probabilities with 5'-overlap.
gamma: Numeric vector of marginal overlapping hit probabilities.
singlestranded: logical flag to indicate whether one or both strands are scanned for motif matches.