Objects of this class serve as a container that holds parameters for the overlapping hit probabilities.

An Overlap object is constructed via the `probOverlapHit`

`alpha`

Scalar numeric significance level to call motif matches

`beta`

Numeric vector of principal overlapping hit probabilities on the same strand.

`beta3p`

Numeric vector of principal overlapping hit probabilities with 3'-overlap.

`beta5p`

Numeric vector of principal overlapping hit probabilities with 5'-overlap.

`gamma`

Numeric vector of marginal overlapping hit probabilities.

`singlestranded`

logical flag to indicate whether one or both strands are scanned for motif matches.

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