readBackground: Estimates a background model from a set of DNA sequences
In motifcounter: R package for analysing TFBSs in DNA sequences
Description
Usage
Arguments
Value
Examples
View source: R/background_wrapper.R
Description
Given a set of DNA sequences and an order, this function
estimates an order-d Markov model which is used to characterize
random DNA sequences.
Usage
1
readBackground(seqs, order = 1)
Arguments
seqs
A DNAStringSet object
order
Order of the Markov models that shall be used as the
background model. Default: order = 1.
Value
A Background object
Examples
1
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3
4
5
6
# Load sequences
file = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(file)
# Estimate an order-1 Markov model
bg = readBackground(seqs, 1)
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value Examples
View source: R/background_wrapper.R
Description
Given a set of DNA sequences and an order, this function estimates an order-d Markov model which is used to characterize random DNA sequences.
Usage
1 | readBackground(seqs, order = 1)
|
Arguments
seqs |
A DNAStringSet object |
order |
Order of the Markov models that shall be used as the background model. Default: order = 1. |
Value
A Background object
Examples
1 2 3 4 5 6 | # Load sequences
file = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(file)
# Estimate an order-1 Markov model
bg = readBackground(seqs, 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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