generateDNAString: Generate DNAString
In motifcounter: R package for analysing TFBSs in DNA sequences
Description
Usage
Arguments
Value
See Also
Examples
View source: R/simulate_wrapper.R
Description
This function generates a random DNAString of a given length
by sampling from the background model.
Usage
1
generateDNAString(len, bg)
Arguments
len
Integer length of the sequence
bg
A Background object
Value
A DNAString object
See Also
Examples
1
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# Load sequences
seqfile = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(seqfile)
# Load background
bg = readBackground(seqs, 1)
# Generate a 1 kb random sequence
motifcounter:::generateDNAString(1000, bg)
motifcounter documentation built on Nov. 8, 2020, 5:44 p.m.
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Description Usage Arguments Value See Also Examples
View source: R/simulate_wrapper.R
Description
This function generates a random DNAString of a given length by sampling from the background model.
Usage
1 | generateDNAString(len, bg)
|
Arguments
len |
Integer length of the sequence |
bg |
A Background object |
Value
A DNAString object
See Also
Examples
1 2 3 4 5 6 7 8 9 | # Load sequences
seqfile = system.file("extdata", "seq.fasta", package = "motifcounter")
seqs = Biostrings::readDNAStringSet(seqfile)
# Load background
bg = readBackground(seqs, 1)
# Generate a 1 kb random sequence
motifcounter:::generateDNAString(1000, bg)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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