getAllTermParentsById: Returns set of all parents of the term of interest
In ontoCAT: Ontology traversal and search
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
Returns set of all parents of the term of interest. Term in the set is represented as the instance of the OntologyTerm class
Usage
1
getAllTermParentsById(object,id)
Arguments
object
instance of the Ontology class
id
accession string of the term of interest
Value
Returns set of ontology terms: each term in the set is the instance of the OntologyTerm class
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology, OntologyTerm and getAllTermParents
ontoCAT documentation built on Nov. 17, 2017, 12:06 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
Returns set of all parents of the term of interest. Term in the set is represented as the instance of the OntologyTerm class
Usage
1 | getAllTermParentsById(object,id)
|
Arguments
object |
instance of the |
id |
accession string of the term of interest |
Value
Returns set of ontology terms: each term in the set is the instance of the OntologyTerm class
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology, OntologyTerm and getAllTermParents
R Package Documentation
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