getTermAndAllChildrenById: Returns accessions of all term's parents and term itself
In ontoCAT: Ontology traversal and search
Description
Usage
Arguments
Value
Author(s)
References
See Also
Description
Returns accessions of term itself and all its children recursively.
Usage
1
getTermAndAllChildrenById(object,id)
Arguments
object
instance of the Ontology class
id
accession string of the term of interest
Value
Returns list of accessions.
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology and OntologyTerm and getTermAndAllChildren
ontoCAT documentation built on Nov. 17, 2017, 12:06 p.m.
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Description Usage Arguments Value Author(s) References See Also
Description
Returns accessions of term itself and all its children recursively.
Usage
1 | getTermAndAllChildrenById(object,id)
|
Arguments
object |
instance of the |
id |
accession string of the term of interest |
Value
Returns list of accessions.
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology and OntologyTerm and getTermAndAllChildren
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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