getRootIds: Returns root terms of ontology
In ontoCAT: Ontology traversal and search
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Returns accessions of root terms of the ontology. For some ontologies these functions might fail when the ontology used was not design to have root classes
Usage
1
getRootIds(object)
Arguments
object
instance of the Ontology class
Value
Returns list of accessions.
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology and OntologyTerm
Examples
1
2
efo <- getEFO()
getRootIds(efo)
ontoCAT documentation built on Nov. 17, 2017, 12:06 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
Returns accessions of root terms of the ontology. For some ontologies these functions might fail when the ontology used was not design to have root classes
Usage
1 | getRootIds(object)
|
Arguments
object |
instance of the |
Value
Returns list of accessions.
Author(s)
Natalja Kurbatova
References
Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118
Experimental Factor Ontology http://www.ebi.ac.uk/efo
Ontology Common API Tasks java library http://www.ontocat.org
Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/
See Also
Ontology and OntologyTerm
Examples
1 2 | efo <- getEFO()
getRootIds(efo)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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