showPathsToTerm: Returns paths to the term

Description Usage Arguments Value Author(s) References See Also Examples

Description

Returns paths to the specified term from ontology's root term. Term in the set is represented as the instance of the OntologyTerm class.

Usage

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    showPathsToTerm(object1,object2)

Arguments

object1

instance of the Ontology class

object2

instance of the OntologyTerm class

Value

Returns paths in a string form

Author(s)

Natalja Kurbatova

References

Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)

Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118

Experimental Factor Ontology http://www.ebi.ac.uk/efo

Ontology Common API Tasks java library http://www.ontocat.org

Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/

See Also

Ontology and OntologyTerm

Examples

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    efo <- getEFO()
    term <- getTermById(efo,"EFO_0000827")
    showPathsToTerm(efo,term)

ontoCAT documentation built on May 31, 2017, 2:03 p.m.