showPathsToTerm: Returns paths to the term

In ontoCAT: Ontology traversal and search

Description

Returns paths to the specified term from ontology's root term. Term in the set is represented as the instance of the OntologyTerm class.

Usage

    showPathsToTerm(object1,object2)

Arguments

object1	instance of the Ontology class
object2	instance of the OntologyTerm class

Value

Returns paths in a string form

Author(s)

Natalja Kurbatova

References

Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)

Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118

Experimental Factor Ontology http://www.ebi.ac.uk/efo

Ontology Common API Tasks java library http://www.ontocat.org

Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/

See Also

Ontology and OntologyTerm

Examples

    efo <- getEFO()
    term <- getTermById(efo,"EFO_0000827")
    showPathsToTerm(efo,term)

ontoCAT documentation built on Nov. 17, 2017, 12:06 p.m.