getEFOBranchRootIds: Returns all term's parents

Description Usage Arguments Value Author(s) References See Also Examples

Description

Returns accessions of EFO branch roots. Function specific for EFO.

Usage

1

Arguments

object

instance of the Ontology class

Value

Returns list of accessions.

Author(s)

Natalja Kurbatova

References

Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT – a simpler way to access ontology resources. Available from Nature Precedings http://dx.doi.org/10.1038/npre.2010.4666.1 (2010)

Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. Bioinformatics 2010, 26(8):1112–1118

Experimental Factor Ontology http://www.ebi.ac.uk/efo

Ontology Common API Tasks java library http://www.ontocat.org

Java sources and javadocs: http://sourceforge.net/projects/ontocat/files/

See Also

Ontology and OntologyTerm

Examples

1
2
    efo <- getEFO()
    getEFOBranchRootIds(efo)

ontoCAT documentation built on Nov. 17, 2017, 12:06 p.m.