AssignmentRule-class: SBML type "AssignmentRule"

In rsbml: R support for SBML, using libsbml

Description

An equation that assigns a value to the quantity of a Species, the size of a Compartment or the value of a Parameter.

Instantiation

Objects can be created by calls of the form new("AssignmentRule", ...).

Slots

variable:

Object of class "character" naming the variable (the id of a Species, Compartment or Parameter) to set.

type:

Object of class "character", deprecated.

math:

Object of class "expression" specifying the equation.

metaId:

Object of class "character" that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the annotation element.

notes:

Object of class "character" containing user-readable XHTML notes about an element.

annotation:

Object of class "character" containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

cvTerms:

Object of class "list" containing instances of CVTerm associated with this element.

sboTerm:

Object of class "integer" identifying a term in the Systems Biology Ontology (SBO).

Extends

Class "Rule", directly. Class "SBase", by class "Rule", distance 2.

Methods

variable

signature(object = "AssignmentRule"): gets the variable slot

variable<-

signature(object = "AssignmentRule"): sets the variable slot

type

signature(object = "AssignmentRule"): gets the type slot

type<-

signature(object = "AssignmentRule"): sets the type slot

Author(s)

Michael Lawrence

References

http://sbml.org/documents/

rsbml documentation built on Nov. 8, 2020, 8:09 p.m.