CVTerm-class: SBML Type "CVTerm"

In rsbml: R support for SBML, using libsbml

Description

A MIRIAM annotation, consisting of a qualifier ("model", "biological" or something else) and a resource (URI).

Objects from the Class

Objects can be created by calls of the form new("CVTerm", ...).

Slots

qualifierType:

Object of class "character" specifying the type of qualifier for this term. Types "model" and "biological" have special meaning, but any string may be specified.

modelQualifierType:

Object of class "character" specifying the type of model qualifier, if qualifierType is set to "model". Types "is" and "isDescribedBy" are formally defined in MIRIAM, but any string may be specified.

biologicalQualifierType:

Object of class "character" specifying the type of biological qualifier, if qualifierType is set to "biological". Types "is", "hasPart", "isPartOf", "isVersionOf", "hasVersion", "isHomologTo", and "isDescribedBy" are formally defined in MIRIAM, though any string may be specified.

resources:

Object of class "character" specifying a URI that identifies some resource related an SBML element by the qualifier.

Methods

biologicalQualifierType

signature(object = "CVTerm"): gets the biologicalQualifierType slot.

biologicalQualifierType<-

signature(object = "CVTerm"): sets the biologicalQualifierType slot.

modelQualifierType

signature(object = "CVTerm"): gets the modelQualifierType slot.

modelQualifierType<-

signature(object = "CVTerm"): sets the modelQualifierType slot.

qualifierType

signature(object = "CVTerm"): gets the qualifierType slot.

qualifierType<-

signature(object = "CVTerm"): sets the qualifierType slot.

resources

signature(object = "CVTerm"): gets the resources slot.

resources<-

signature(object = "CVTerm"): sets the resources slot.

Author(s)

Michael Lawrence

References

http://sbml.org/documents/

rsbml documentation built on Nov. 8, 2020, 8:09 p.m.