ReactionGlyph-class: SBML type "ReactionGlyph"

Description Instantiation Slots Extends Methods Author(s) References

Description

A glyph representing a Reaction in the SBML layout.

Instantiation

Objects can be created by calls of the form new("ReactionGlyph", ...).

Slots

reaction:

Object of class "character" identifying the reaction represented by this glyph.

glyphCurve:

Object of class "Curve" describing this glyph as a curve (optional).

speciesReferenceGlyphs:

Object of class "list" containing SpeciesReferenceGlyphs that represent the SpeciesReferences of the underlying Reaction. The names of the list correspond to the IDs of the elements.

id:

Object of class "character" uniquely identifying this component.

boundingBox:

Object of class "BoundingBox" describing the position and size of the graphical object.

metaId:

Object of class "character" that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the annotation element.

notes:

Object of class "character" containing user-readable XHTML notes about an element.

annotation:

Object of class "character" containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

cvTerms:

Object of class "list" containing instances of CVTerm associated with this element.

sboTerm:

Object of class "integer" identifying a term in the Systems Biology Ontology (SBO).

Extends

Class "GraphicalObject", directly. Class "SBase", by class "GraphicalObject", distance 2.

Methods

glyphCurve

signature(expr = "ReactionGlyph"): gets the glyphCurve slot

glyphCurve<-

signature(object = "ReactionGlyph"): sets the glyphCurve slot

reaction

signature(object = "ReactionGlyph"): gets the reaction slot

reaction<-

signature(object = "ReactionGlyph"): sets the reaction slot

speciesReferenceGlyphs

signature(object = "ReactionGlyph"): gets the speciesReferenceGlyphs slot

speciesReferenceGlyphs<-

signature(object = "ReactionGlyph"): sets the speciesReferenceGlyphs slot

Author(s)

Michael Lawrence

References

http://projects.villa-bosch.de/bcb/sbml


rsbml documentation built on Nov. 8, 2020, 8:09 p.m.