SpeciesGlyph-class: SBML type "SpeciesGlyph"

In rsbml: R support for SBML, using libsbml

Description

A glyph representing a Species in an SBML layout.

Instantiation

Objects can be created by calls of the form new("SpeciesGlyph", ...).

Slots

species:

Object of class "character" identifying the species this glyph represents.

id:

Object of class "character" uniquely identifying this component.

boundingBox:

Object of class "BoundingBox" describing the position and size of the graphical object.

metaId:

Object of class "character" that is an XML ID "described" by an RDF resource. This links an SBML element to an RDF resource. RDF may appear anywhere in an SBML element, but is usually placed inside the annotation element.

notes:

Object of class "character" containing user-readable XHTML notes about an element.

annotation:

Object of class "character" containing additional machine-readable information about an element, usually as RDF, such as BioPAX. This is where application-specific data belongs.

cvTerms:

Object of class "list" containing instances of CVTerm associated with this element.

sboTerm:

Object of class "integer" identifying a term in the Systems Biology Ontology (SBO).

Extends

Class "GraphicalObject", directly. Class "SBase", by class "GraphicalObject", distance 2.

Methods

species

signature(object = "SpeciesGlyph"): gets the species slot

species<-

signature(object = "SpeciesGlyph"): sets the species slot

Author(s)

Michael Lawrence

References

http://projects.villa-bosch.de/bcb/sbml

rsbml documentation built on Nov. 8, 2020, 8:09 p.m.