Files in simplifyEnrichment

Simplify Functional Enrichment Results

R/z.register_methods.R R/ht_clusters.R R/utils.R R/word_count.R R/stats.R R/similarity_DO.R R/node_partition.R R/similarity_GO.R R/zzz.R R/compare_methods.R R/binary_cut.R R/similarity_by_overlap.R R/cluster.R R/simplify.R R/dend_utils.R R/00_S4_generic_methods.R vignettes/simplifyEnrichment.Rmd man/term_similarity_from_enrichResult.Rd man/reset_clustering_methods.Rd man/cmp_make_clusters.Rd man/all_clustering_methods.Rd man/cluster_by_dynamicTreeCut.Rd man/cluster_by_mclust.Rd man/simplifyEnrichment.Rd man/term_similarity_from_KEGG.Rd man/cluster_by_apcluster.Rd man/heightDetails.word_cloud.Rd man/remove_clustering_methods.Rd man/ht_clusters.Rd man/binary_cut.Rd man/cluster_by_MCL.Rd man/plot_binary_cut.Rd man/cluster_by_hdbscan.Rd man/register_clustering_methods.Rd man/cluster_by_igraph.Rd man/subset_enrichResult.Rd man/compare_clustering_methods.Rd man/term_similarity.Rd man/difference_score.Rd man/partition_by_pam.Rd man/partition_by_hclust.Rd man/select_cutoff.Rd man/partition_by_kmeanspp.Rd man/dend_node_apply.Rd man/partition_by_kmeans.Rd man/scale_fontsize.Rd man/cluster_terms.Rd man/GO_similarity.Rd man/edit_node.Rd man/cmp_make_plot.Rd man/simplifyGO.Rd man/DO_similarity.Rd man/guess_ont.Rd man/word_cloud_grob.Rd man/term_similarity_from_Reactome.Rd man/cluster_by_kmeans.Rd man/term_similarity_from_gmt.Rd man/term_similarity_from_MSigDB.Rd man/count_word.Rd man/random_DO.Rd man/widthDetails.word_cloud.Rd man/random_GO.Rd tests/test-all.R tests/testthat/test_sim.R tests/testthat/test_register.R tests/testthat/test_GO_similarity.R tests/testthat/test_dend_utils.R inst/doc/simplifyEnrichment.R inst/doc/simplifyEnrichment.Rmd