API for singscore
Rank-based single-sample gene set scoring method

Global functions
calcBounds	Source code
calcBoundsMulti	Source code
calcBoundsUnknownDir	Source code
calcBoundsUnknownDirMulti	Source code
calcScores	Source code
calcScoresUpDn	Source code
checkGenesMulti	Source code
emptyScoreDf	Source code
generateNull	Man page
generateNull,GeneSet,ANY-method	Man page
generateNull,GeneSet,GeneSet-method	Man page
generateNull,vector,ANY-method	Man page
generateNull,vector,vector-method	Man page
generateNull_intl	Man page Source code
getColorScale	Source code
getPvals	Man page Source code
getStableGenes	Man page Source code
getTheme	Source code
isScoreCol	Source code
multiScore	Man page
multiScore,matrix,GeneSetCollection,GeneSetCollection-method	Man page
multiScore,matrix,GeneSetCollection,missing-method	Man page
multiScore,matrix,list,list-method	Man page
multiScore,matrix,list,missing-method	Man page
plotDispersion	Man page Source code
plotNull	Man page Source code
plotRankDensity	Man page
plotRankDensity,ANY,GeneSet,GeneSet-method	Man page
plotRankDensity,ANY,GeneSet,missing-method	Man page
plotRankDensity,ANY,vector,missing-method	Man page
plotRankDensity,ANY,vector,vector-method	Man page
plotRankDensity_intl	Man page
plotScoreLandscape	Man page Source code
processAnnotation	Source code
projectScoreLandscape	Man page Source code
rankExpr	Source code
rankExprStable	Source code
rankGenes	Man page
rankGenes,DGEList-method	Man page
rankGenes,ExpressionSet-method	Man page
rankGenes,SummarizedExperiment-method	Man page
rankGenes,data.frame-method	Man page
rankGenes,matrix-method	Man page
scoredf_ccle_epi	Man page
scoredf_ccle_mes	Man page
scoredf_tcga_epi	Man page
scoredf_tcga_mes	Man page
simpleScore	Man page
simpleScore,matrix,GeneSet,GeneSet-method	Man page
simpleScore,matrix,GeneSet,missing-method	Man page
simpleScore,matrix,vector,missing-method	Man page
simpleScore,matrix,vector,vector-method	Man page
singscore	Man page
tgfb_expr_10_se	Man page
tgfb_gs_dn	Man page
tgfb_gs_up	Man page
toy_expr_se	Man page
toy_gs_dn	Man page
toy_gs_up	Man page