Files in singscore

Rank-based single-sample gene set scoring method

NEWS.md README.Rmd

_pkgdown.yml

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/toy_gs_dn.rda

data/tgfb_gs_up.rda

data/toy_expr_se.rda

data/scoredf_ccle_mes.rda

data/toy_gs_up.rda

data/scoredf_tcga_epi.rda

data/tgfb_gs_dn.rda

data/tgfb_expr_10_se.rda

data/scoredf_ccle_epi.rda

data/scoredf_tcga_mes.rda

R/stableGenes.R R/permuTest.R

R/sysdata.rda

R/singscore.R R/plotRankDensityGeneric.R R/simpleScoreGeneric.R R/rankAndScoring.R R/plot.R R/rankGenesGeneric.R R/multiScoreGeneric.R R/generatNullGeneric.R

docs/favicon-32x32.png

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docs/index.html

docs/pkgdown.yml

docs/bootstrap-toc.css

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docs/favicon.ico

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docs/docsearch.js

docs/404.html

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docs/pkgdown.js

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docs/pkgdown.css

docs/bootstrap-toc.js

docs/articles/index.html

docs/articles/singscore.html

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docs/articles/singscore_files/figure-html/projectScore-1.png

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docs/articles/singscore_files/figure-html/projectScore2-1.png

docs/articles/singscore_files/figure-html/plotNull2-1.png

docs/articles/singscore_files/figure-html/plotNull1-1.png

docs/articles/singscore_files/figure-html/unnamed-chunk-2-1.png

docs/reference/simpleScore.html

docs/reference/plotRankDensity.html

docs/reference/index.html

docs/reference/multiScore.html

docs/reference/plotScoreLandscape.html

docs/reference/plotNull-1.png

docs/reference/plotDispersion-1.png

docs/reference/plotRankDensity-1.png

docs/reference/scoredf_ccle_mes.html

docs/reference/singscore.html

docs/reference/tgfb_expr_10_se.html

docs/reference/toy_gs_up.html

docs/reference/toy_expr_se.html

docs/reference/generateNull_intl.html

docs/reference/scoredf_tcga_mes.html

docs/reference/getStableGenes.html

docs/reference/plotScoreLandscape-1.png

docs/reference/plotNull-2.png

docs/reference/projectScoreLandscape.html

docs/reference/plotNull.html

docs/reference/generateNull.html

docs/reference/getPvals.html

docs/reference/rankGenes.html

docs/reference/toy_gs_dn.html

docs/reference/tgfb_gs_dn.html

docs/reference/plotDispersion.html

docs/reference/scoredf_tcga_epi.html

docs/reference/plotRankDensity_intl.html

docs/reference/tgfb_gs_up.html

docs/reference/scoredf_ccle_epi.html

docs/reference/figures/logo.png

docs/news/index.html

vignettes/singscore.Rmd

pkgdown/favicon/favicon-32x32.png

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pkgdown/favicon/favicon.ico

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon.png

man/plotDispersion.Rd man/scoredf_ccle_mes.Rd man/projectScoreLandscape.Rd man/plotRankDensity_intl.Rd man/plotRankDensity.Rd man/plotScoreLandscape.Rd man/multiScore.Rd man/singscore.Rd man/scoredf_tcga_epi.Rd man/plotNull.Rd man/tgfb_gs_dn.Rd man/simpleScore.Rd man/toy_gs_dn.Rd man/scoredf_ccle_epi.Rd man/rankGenes.Rd man/generateNull.Rd man/toy_gs_up.Rd man/getPvals.Rd man/generateNull_intl.Rd man/getStableGenes.Rd man/tgfb_expr_10_se.Rd man/tgfb_gs_up.Rd man/toy_expr_se.Rd man/scoredf_tcga_mes.Rd

man/figures/logo.png

tests/testthat.R tests/testthat/test-scoring.R tests/testthat/test-getStableGenes.R tests/testthat/test-getPvals.R tests/testthat/test-multiSingscore.R tests/testthat/test-plotScoreLandscape.R tests/testthat/test-projectScoreLandscape.R tests/testthat/test-generateNull.R tests/testthat/test-plotDis.R tests/testthat/test-plotRankDens.R tests/testthat/test-rank.R

inst/CITATION

inst/REFERENCES.bib

inst/doc/singscore.Rmd inst/doc/singscore.R

inst/doc/singscore.html

singscore documentation built on Nov. 8, 2020, 8:27 p.m.