scoredf_ccle_epi: Pre-computed scores of the CCLE dataset against an epithelial...
In singscore: Rank-based single-sample gene set scoring method
Description
Usage
Format
References
See Also
Description
This data.frame stores pre-computed scores of the CCLE dataset Barretina et al calculated using the
simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al. The
data.frame has scores for 55 samples. Please refer to the vignettes for
instructions on how to obtain the full datasets.
Usage
1
Format
An object of class data.frame with 55 rows and 2 columns.
References
Barretina, Jordi, Giordano Caponigro, Nicolas Stransky, Kavitha
Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, et al.
2012. “The Cancer Cell Line Encyclopedia Enables Predictive Modelling of
Anticancer Drug Sensitivity.” Nature 483 (7391): 603–7.
Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi Mori, Ruby
Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD. “Epithelial-Mesenchymal
Transition Spectrum Quantification and Its Efficacy in Deciphering Survival
and Drug Responses of Cancer Patients.” EMBO Molecular Medicine 6 (10).
Oxford, UK: BlackWell Publishing Ltd: 1279–93. doi:10.15252/emmm.201404208.
See Also
scoredf_ccle_mes
singscore documentation built on Nov. 8, 2020, 8:27 p.m.
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Description Usage Format References See Also
Description
This data.frame stores pre-computed scores of the CCLE dataset Barretina et al calculated using the
simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al. The
data.frame has scores for 55 samples. Please refer to the vignettes for
instructions on how to obtain the full datasets.
Usage
1 |
Format
An object of class data.frame with 55 rows and 2 columns.
References
Barretina, Jordi, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, et al. 2012. “The Cancer Cell Line Encyclopedia Enables Predictive Modelling of Anticancer Drug Sensitivity.” Nature 483 (7391): 603–7.
Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi Mori, Ruby Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD. “Epithelial-Mesenchymal Transition Spectrum Quantification and Its Efficacy in Deciphering Survival and Drug Responses of Cancer Patients.” EMBO Molecular Medicine 6 (10). Oxford, UK: BlackWell Publishing Ltd: 1279–93. doi:10.15252/emmm.201404208.
See Also
scoredf_ccle_mes
R Package Documentation
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