scoredf_ccle_epi: Pre-computed scores of the CCLE dataset against an epithelial...

Description Usage Format References See Also

Description

This data.frame stores pre-computed scores of the CCLE dataset Barretina et al calculated using the simpleScore() function against the epithelial gene signature from Tan, Tuan Zea et al. The data.frame has scores for 55 samples. Please refer to the vignettes for instructions on how to obtain the full datasets.

Usage

1

Format

An object of class data.frame with 55 rows and 2 columns.

References

Barretina, Jordi, Giordano Caponigro, Nicolas Stransky, Kavitha Venkatesan, Adam A Margolin, Sungjoon Kim, Christopher J Wilson, et al. 2012. “The Cancer Cell Line Encyclopedia Enables Predictive Modelling of Anticancer Drug Sensitivity.” Nature 483 (7391): 603–7.

Tan, Tuan Zea, Qing Hao Miow, Yoshio Miki, Tetsuo Noda, Seiichi Mori, Ruby Yun-Ju Huang, and Jean Paul Thiery. 2014–10AD. “Epithelial-Mesenchymal Transition Spectrum Quantification and Its Efficacy in Deciphering Survival and Drug Responses of Cancer Patients.” EMBO Molecular Medicine 6 (10). Oxford, UK: BlackWell Publishing Ltd: 1279–93. doi:10.15252/emmm.201404208.

See Also

scoredf_ccle_mes


singscore documentation built on April 29, 2020, 5:18 a.m.