tgfb_expr_10_se: An example gene expression dataset
In singscore: Rank-based single-sample gene set scoring method
Description
Usage
Format
Source
References
Description
A microarray gene expression dataset that was originally obtained from the
integrated TGFb-EMT data published by (Foroutan et al, 2017). (ComBat
corrected values). tgfb_expr_10 is a subset of the integrated TGFb-EMT
data consisting of 10 samples (4 TGFb treated and 6 controls) each with
expression values for 11900 genes.
Usage
1
Format
A SummarizedExperiment object
Source
References
Foroutan, Momeneh, Joseph Cursons, Soroor Hediyeh-Zadeh, Erik W
Thompson, and Melissa J Davis. 2017. “A Transcriptional Program for
Detecting Tgfbeta-Induced Emt in Cancer.” Molecular Cancer Research.
American Association for Cancer Research.
doi:10.1158/1541-7786.MCR-16-0313.
singscore documentation built on Nov. 8, 2020, 8:27 p.m.
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Description Usage Format Source References
Description
A microarray gene expression dataset that was originally obtained from the
integrated TGFb-EMT data published by (Foroutan et al, 2017). (ComBat
corrected values). tgfb_expr_10 is a subset of the integrated TGFb-EMT
data consisting of 10 samples (4 TGFb treated and 6 controls) each with
expression values for 11900 genes.
Usage
1 |
Format
A SummarizedExperiment object
Source
References
Foroutan, Momeneh, Joseph Cursons, Soroor Hediyeh-Zadeh, Erik W Thompson, and Melissa J Davis. 2017. “A Transcriptional Program for Detecting Tgfbeta-Induced Emt in Cancer.” Molecular Cancer Research. American Association for Cancer Research. doi:10.1158/1541-7786.MCR-16-0313.
R Package Documentation
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