Description Usage Arguments Value
Drop lowly transcribed genes for TMM normalization
1 2 3 4 5 6 7 8 9 | add_scaled_counts_bulk.get_low_expressed(
.data,
.sample = sample,
.transcript = transcript,
.abundance = count,
factor_of_interest = NULL,
minimum_counts = 10,
minimum_proportion = 0.7
)
|
.data |
A tibble |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
factor_of_interest |
The name of the column of the factor of interest |
minimum_counts |
A positive integer. Minimum counts required for at least some samples. |
minimum_proportion |
A real positive number between 0 and 1. It is the threshold of proportion of samples for each transcripts/genes that have to be characterised by a cmp bigger than the threshold to be included for scaling procedure. |
A tibble filtered
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