get_cell_type_proportions: Get cell type proportions from cibersort

In tidybulk: Brings transcriptomics to the tidyverse

Description

Get cell type proportions from cibersort

Usage

get_cell_type_proportions(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  reference = X_cibersort,
  method = "cibersort",
  ...
)

Arguments

.data	A tibble
.sample	The name of the sample column
.transcript	The name of the transcript/gene column
.abundance	The name of the transcript/gene abundance column
reference	A data frame. The transcript/cell_type data frame of integer transcript abundance
method	A character string. The method to be used. At the moment Cibersort (default) and llsr (linear least squares regression) are available.
...	Further parameters passed to the function Cibersort

Value

A tibble including additional columns

tidybulk documentation built on April 7, 2021, 6 p.m.