Description Usage Arguments Value
Get differential transcription information to a tibble using edgeR.
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.data |
A tibble |
.formula |
a formula with no response variable, referring only to numeric variables |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
.contrasts |
A character vector. See edgeR makeContrasts specification for the parameter 'contrasts'. If contrasts are not present the first covariate is the one the model is tested against (e.g., ~ factor_of_interest) |
method |
A string character. Either "edgeR_quasi_likelihood" (i.e., QLF), "edgeR_likelihood_ratio" (i.e., LRT) |
scaling_method |
A character string. The scaling method passed to the backend function (i.e., edgeR::calcNormFactors; "TMM","TMMwsp","RLE","upperquartile") |
omit_contrast_in_colnames |
If just one contrast is specified you can choose to omit the contrast label in the colnames. |
A tibble with edgeR results
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