aggregate_duplicated_transcripts_bulk: Aggregates multiple counts from the same samples (e.g., from...

In tidybulk: Brings transcriptomics to the tidyverse

Description

Aggregates multiple counts from the same samples (e.g., from isoforms) This function aggregates counts over samples, concatenates other character columns, and averages other numeric columns

Usage

aggregate_duplicated_transcripts_bulk(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL,
  aggregation_function = sum,
  keep_integer = TRUE
)

Arguments

.data	A tibble
.sample	The name of the sample column
.transcript	The name of the transcript/gene column
.abundance	The name of the transcript/gene abundance column
aggregation_function	A function for counts aggregation (e.g., sum)
keep_integer	A boolean

Value

A tibble with aggregated genes and annotation

tidybulk documentation built on April 7, 2021, 6 p.m.